Studying at the University of Verona
Here you can find information on the organisational aspects of the Programme, lecture timetables, learning activities and useful contact details for your time at the University, from enrolment to graduation.
Type D and Type F activities
This information is intended exclusively for students already enrolled in this course.If you are a new student interested in enrolling, you can find information about the course of study on the course page:
Laurea magistrale in Medical bioinformatics - Enrollment from 2025/2026Type D learning activities are the student's choice, type F activities are additional knowledge useful for job placement (internships, transversal skills, project works, etc.). According to the Teaching Regulations of the Course, some activities can be chosen and entered independently in the booklet, others must be approved by a special committee to verify their consistency with the study plan. Type D or F learning activities can be covered by the following activities.
1. Modules taught at the University of Verona
Include the modules listed below and/or in the Course Catalogue (which can also be filtered by language of delivery via Advanced Search).
Booklet entry mode: if the teaching is included among those listed below, the student can enter it independently during the period in which the curriculum is open; otherwise, the student must make a request to the Secretariat, sending the form to carriere.scienze@ateneo.univr.it during the period indicated.
2. CLA certificate or language equivalency
In addition to those required by the curriculum/study plan, the following are recognized for those matriculated from A.Y. 2021/2022:
- English language: 3 CFUs are recognized for each level of proficiency above that required by the course of study (if not already recognized in the previous course of study).
- Other languages and Italian for foreigners: 3 CFUs are recognized for each proficiency level starting from A2 (if not already recognized in the previous study cycle).
These CFUs will be recognized, up to a maximum of 6 CFUs in total, of type F if the study plan allows it, or of type D. Additional elective credits for language knowledge may be recognized only if consistent with the student's educational project and if adequately justified.
Those enrolled until A.Y. 2020/2021 should consult the information found here.
Method of inclusion in the booklet: request the certificate or equivalency from CLA and send it to the Student Secretariat - Careers for the inclusion of the exam in the career, by email: carriere.scienze@ateneo.univr.it
3. Transversal skills
Discover the training paths promoted by the University's TALC - Teaching and learning center intended for students regularly enrolled in the academic year of course delivery https://talc.univr.it/it/competenze-trasversali
Mode of inclusion in the booklet: the teaching is not expected to be included in the curriculum. Only upon obtaining the Open Badge will the booklet CFUs be automatically validated. The registration of CFUs in career is not instantaneous, but there will be some technical time to wait.
4. Contamination lab
The Contamination Lab Verona (CLab Verona) is an experiential course with modules on innovation and enterprise culture that offers the opportunity to work in teams with students from all areas to solve challenges set by companies and organisations.
Upon completion of a CLab, students will be entitled to receive 6 CFU (D- or F-type credits).
Find out more: https://www.univr.it/clabverona
PLEASE NOTE: In order to be admitted to any teaching activities, including those of your choice, you must be enrolled in the academic year in which the activities in question are offered. Students who are about to graduate in the December and April sessions are therefore advised NOT to undertake extracurricular activities in the new academic year in which they are not enrolled, as these graduation sessions are valid for students enrolled in the previous academic year. Therefore, students who undertake an activity in an academic year in which they are not enrolled will not be granted CFU credits.
5. Internship/internship period
In addition to the CFUs stipulated in the curriculum/study plan (check carefully what is indicated on the Teaching Regulations) here you can find information on how to activate the internship.
Check in the regulations which activities can be Type D and which can be Type F.
Please also note that for traineeships activated after 1 October 2024, it will be possible to recognise excess hours in terms of type D credits, limited only to traineeship experiences carried out at host organisations outside the University.
| years | Modules | TAF | Teacher |
|---|---|---|---|
| 1° 2° | Attention Laboratory | D |
Pietro Sala
(Coordinator)
|
| 1° 2° | Elements of Cosmology and General Relativity | D |
Claudia Daffara
(Coordinator)
|
| 1° 2° | Introduction to quantum mechanics for quantum computing | D |
Claudia Daffara
(Coordinator)
|
| 1° 2° | Introduction to smart contract programming for ethereum | D |
Sara Migliorini
(Coordinator)
|
| 1° 2° | Python programming language [English edition] | D |
Carlo Combi
(Coordinator)
|
| 1° 2° | Mini-course on Deep Learning & Medical Imaging | D |
Vittorio Murino
(Coordinator)
|
| 1° 2° | BEYOND ARDUINO: FROM PROTOTYPE TO PRODUCT WITH STM MICROCONTROLLER | D |
Franco Fummi
(Coordinator)
|
| 1° 2° | APP REACT PLANNING | D |
Graziano Pravadelli
(Coordinator)
|
| 1° 2° | HW components design on FPGA | D |
Franco Fummi
(Coordinator)
|
| years | Modules | TAF | Teacher |
|---|---|---|---|
| 1° 2° | Attention Laboratory | D |
Pietro Sala
(Coordinator)
|
| 1° 2° | LaTeX Language | D |
Enrico Gregorio
(Coordinator)
|
| 1° 2° | Python programming language [Edizione in italiano] | D |
Carlo Combi
(Coordinator)
|
| 1° 2° | Rapid prototyping on Arduino | D |
Franco Fummi
(Coordinator)
|
| 1° 2° | Programming Challanges | D |
Romeo Rizzi
(Coordinator)
|
| 1° 2° | Protection of intangible assets (SW and invention)between industrial law and copyright | D |
Mila Dalla Preda
(Coordinator)
|
Biomedical image processing (2024/2025)
Teaching code
4S004554
Credits
6
Language
English
Scientific Disciplinary Sector (SSD)
INF/01 - INFORMATICS
Courses Single
Authorized
The teaching is organized as follows:
Teoria
Laboratorio
Learning objectives
The course aims at providing students with the applied and theoretical basis for processing biomedical images and extract useful information from them to support the diagnosis process. Knowledge and understanding. At the end of the course, the student shall demonstrate that he/she can apply the material discussed in the lectures to solve effectively the most common issues that may happen throughout a typical analysis pipeline, from the acquisition of the raw images to the correct interpretation of the information extracted from them. Applying knowledge and understanding. In particular, at the end of the course the student shall demonstrate to be able to: a) open, handle and manipulate the multidimensional data acquired with the major imaging modalities (X-rays, magnetic resonance imaging, nuclear medicine and ultrasounds); b) evaluate advantages, disadvantages and peculiarities of each modality; c) interpret correctly the content of such images and be able to link them to physical and biological features of the tissue/organ under exam. Making judgements. The student will be able to develop an analysis pipeline to extract useful information from such biomedical images and help the diagnostic process, applying at each step the most adequate processing choices for the specific data at hand. Communication. At the end of the course, the student shall demonstrate the ability to effectively interact with different collaborators having specific backgrounds typically required in a clinical study based on medical imaging, e.g. engineers, physicists, physicians etc. Lifelong learning skills. He/she will also have the required foundations to be able to elaborate further on any scientific, methodological and recent advances in the field beyond the content of the lectures to extend such basic techniques to diverse and more complex analysis scenarios.
Prerequisites and basic notions
Good familiarity with the main contents of basic courses such as "Signal and image processing" is strongly recommended (but not strictly necessary) for a proper and complete understanding of the course.
Program
(1) Basic concepts
- Image properties: pixel vs voxel, spatial resolution, orientation, data type, etc
- File formats
- Signal-to-noise ratio, Contrast-to-noise ratio, etc
(2) Main imaging modalities (recall principles)
- Radiography: X-rays projection, fluoroscopy and computed tomography
- Nuclear medicine: SPECT and PET
- Ultrasounds
- Magnetic Resonance Imaging
(3) Medical image registration
- Geometric transformations
- Features and similarity measures
- Transformations (linear vs non-linear)
(4) Morphometry analysis
- Region-of-interest analysis
- Voxel-based morphometry
- Surface-based morphometry
- Tract-based morphometry in white matter
(5) Structural connectivity estimation
- Diffusion MRI: principles and main applications
- Estimating microstructural features of the neuronal tissue
- Inferring fibers geometry and organization (a.k.a. tractography)
- Recent advances
(6) Functional connectivity estimation
- Physiology of neurons and how to record their activity
- Functional MRI: principles and main applications
- Elettroencefalography and magnetoencefalography: principles and main applications
- Static vs dynamic connectivity
(7) Network analysis (a.k.a. connectomics)
- A network representation of the brain: how and why?
- Studying brain networks with graph theory: concepts and measures
- Comparing brain networks in different groups of subjects
(8) Laboratory
- Hands-on activities on the topics covered throughout the course
- Real neuroimaging data provided to be analyzed
Didactic methods
Lectures for the theory part with various invited talks given by international experts; in the laboratory part, students will install and use the main software to analyze real images of clinical studies.
Learning assessment procedures
The exam consists of a project, assigned at the end of the course, aimed at analyzing magnetic resonance images taken from a real clinical study. This final project is a fundamental part of the course, as it provides students with the opportunity to put into practice the concepts studied during the theory part, understand the peculiarities of each acquisition mode, touch some typical problems that can occur when biomedical images are processed and the most appropriate techniques applied to improve the quality of the images and extract useful information from them.
Evaluation criteria
The evaluation will be based on (A) a short written report (max 10 pages) and (B) an oral presentation / discussion (which may also include questions on the theory part), in which both the exposure and the interpretation of the methodologies used and the results obtained will be assessed.
Criteria for the composition of the final grade
The final grade will consist of 50% of the written report and 50% based on the presentation.
Exam language
English
