Studying at the University of Verona
Here you can find information on the organisational aspects of the Programme, lecture timetables, learning activities and useful contact details for your time at the University, from enrolment to graduation.
Academic calendar
The academic calendar shows the deadlines and scheduled events that are relevant to students, teaching and technical-administrative staff of the University. Public holidays and University closures are also indicated. The academic year normally begins on 1 October each year and ends on 30 September of the following year.
Course calendar
The Academic Calendar sets out the degree programme lecture and exam timetables, as well as the relevant university closure dates..
| Period | From | To |
|---|---|---|
| I semestre | Oct 1, 2018 | Jan 31, 2019 |
| II semestre | Mar 4, 2019 | Jun 14, 2019 |
| Session | From | To |
|---|---|---|
| Sessione invernale d'esame | Feb 1, 2019 | Feb 28, 2019 |
| Sessione estiva d'esame | Jun 17, 2019 | Jul 31, 2019 |
| Sessione autunnale d'esame | Sep 2, 2019 | Sep 30, 2019 |
| Session | From | To |
|---|---|---|
| Sessione estiva | Jul 16, 2019 | Jul 16, 2019 |
| Sessione autunnale | Nov 19, 2019 | Nov 19, 2019 |
| Sessione invernale | Mar 11, 2020 | Mar 11, 2020 |
| Period | From | To |
|---|---|---|
| Sospensione attività didattica | Nov 2, 2018 | Nov 3, 2018 |
| Vacanze di Natale | Dec 24, 2018 | Jan 6, 2019 |
| Vacanze di Pasqua | Apr 19, 2019 | Apr 28, 2019 |
| Vacanze estive | Aug 5, 2019 | Aug 18, 2019 |
Exam calendar
Exam dates and rounds are managed by the relevant Science and Engineering Teaching and Student Services Unit.
To view all the exam sessions available, please use the Exam dashboard on ESSE3.
If you forgot your login details or have problems logging in, please contact the relevant IT HelpDesk, or check the login details recovery web page.
Should you have any doubts or questions, please check the Enrolment FAQs
Academic staff
maurizio.boscaini@univr.it
chiara.nardon@univr.it
chiara.pintossi@univr.it
Vallini Giovanni
giovanni.vallini@univr.it
045 802 7098; studio dottorandi: 045 802 7095
Study Plan
The Study Plan includes all modules, teaching and learning activities that each student will need to undertake during their time at the University. Please select your Study Plan based on your enrolment year.
| Modules | Credits | TAF | SSD |
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| Modules | Credits | TAF | SSD |
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| Modules | Credits | TAF | SSD |
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1° Year
| Modules | Credits | TAF | SSD |
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2° Year
| Modules | Credits | TAF | SSD |
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3° Year
| Modules | Credits | TAF | SSD |
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Legend | Type of training activity (TTA)
TAF (Type of Educational Activity) All courses and activities are classified into different types of educational activities, indicated by a letter.
Bioinformatics and biological databases (2019/2020)
Teaching code
4S02701
Credits
6
Coordinatore
Language
Italian
Scientific Disciplinary Sector (SSD)
BIO/10 - BIOCHEMISTRY
The teaching is organized as follows:
Modulo 2
Modulo 1
Learning outcomes
The course aims to introduce the student to bioinformatics, providing basic notions basically fo-cused on the analysis of both nucleotide and protein sequences. The course will provide both theo-retical and practical bases of algorithms, programs and methods for searching and analyzing se-quence data contained in biological databases.
At the end of the course students will be able to:
Navigate among different biological databases and know how and where retrive the data
Analyze sequence data by searching similarity in database
Compare, analyze and manage sequence data using different types of programs for sequence alignments.
Program
1. Introduction to bioinformatics
2. Biological databases: primary and secondary databases, search methods in biological databases.
3. Substitution matrix BLOSUM and PAM
4. Introduction to pairwise sequence alignment: dot matrix, algorithm based on dynamic programming (Smith-Watermann, Needlman-Wunsch) , heuristic programs (BLAST and FASTA)
5. Multiple alignments: introduction to multiple alignment algoritms (clustalW and T-Coffee). Positional weight matrices, PSI-BLAST and methods based on Hidden Markov Model (HMM)
6. Introduction to phylogenetic analysis and phylogenetic trees
7. Structural biology: computational methods to study secondary and tertiary protein structure.
Bibliography
| Activity | Author | Title | Publishing house | Year | ISBN | Notes |
|---|---|---|---|---|---|---|
| Modulo 2 | Stefano Pascarella e Alessandro Paiardini | Bioinformatica | Zanichelli | 2011 | 9788808062192 | |
| Modulo 1 | Stefano Pascarella e Alessandro Paiardini | Bioinformatica | Zanichelli | 2011 | 9788808062192 |
Examination Methods
The exam covers both the theoretical part (module 1) and the laboratory part (module 2).
Both parts will be assessed during a single exam.
The exam on the theory part consists of a written test (typically 4 open questions) which aims to verify the level of knowledge acquired relating to the topics covered in the course.
The student must demonstrate to have understood the functioning and application of the main bioinformatics programs and approaches explained in class.
The part relating to the exercises will be carried out on the computer immediately after the written test. Two exercises will be provided which will be solved by putting into practice the skills acquired during the laboratory. The student will also have to demonstrate his ability to interpret the result of the programs studied during the course.
Type D and Type F activities
Modules not yet included
Career prospects
Module/Programme news
News for students
There you will find information, resources and services useful during your time at the University (Student’s exam record, your study plan on ESSE3, Distance Learning courses, university email account, office forms, administrative procedures, etc.). You can log into MyUnivr with your GIA login details.
Further services
I servizi e le attività di orientamento sono pensati per fornire alle future matricole gli strumenti e le informazioni che consentano loro di compiere una scelta consapevole del corso di studi universitario.
Graduation
List of theses and work experience proposals
| theses proposals | Research area |
|---|---|
| Studio delle proprietà di luminescenza di lantanidi in matrici proteiche | Synthetic Chemistry and Materials: Materials synthesis, structure-properties relations, functional and advanced materials, molecular architecture, organic chemistry - Colloid chemistry |
| Multifunctional organic-inorganic hybrid nanomaterials for applications in Biotechnology and Green Chemistry | Synthetic Chemistry and Materials: Materials synthesis, structure-properties relations, functional and advanced materials, molecular architecture, organic chemistry - New materials: oxides, alloys, composite, organic-inorganic hybrid, nanoparticles |
| Stampa 3D di nanocompositi polimerici luminescenti per applicazioni in Nanomedicina | Synthetic Chemistry and Materials: Materials synthesis, structure-properties relations, functional and advanced materials, molecular architecture, organic chemistry - New materials: oxides, alloys, composite, organic-inorganic hybrid, nanoparticles |
| Dinamiche della metilazione del DNA e loro contributo durante il processo di maturazione della bacca di vite. | Various topics |
| Risposte trascrittomiche a sollecitazioni ambientali in vite | Various topics |
| Studio delle basi genomico-funzionali del processo di embriogenesi somatica in vite | Various topics |
Attendance
As stated in point 25 of the Teaching Regulations for the A.Y. 2021/2022, attendance is not mandatory. However, professors may require students to attend lectures for a minimum of hours in order to be able to take the module exam, in which case the methods that will be used to check attendance will be explained at the beginning of the module.Please refer to the Crisis Unit's latest updates for the mode of teaching.
